All functions

Class

• adpcr
• adpcr-class

Convert adpcr object to array

• adpcr2panel

Convert adpcr to ppp

• adpcr2ppp

Binarize digital PCR data

• binarize

Bind dpcr objects

• bind_dpcr
• bind_dpcr,adpcr
• bind_dpcr,adpcr-method
• bind_dpcr,dpcr
• bind_dpcr,dpcr-method
• bind_dpcr,list
• bind_dpcr,list-method
• bind_dpcr-methods

A function to analyze plot the raw data from a BioRad droplet digital PCR

• bioamp

Copy number variation experiment

• BioradCNV

Calculate Array Coordinates

• calc_coordinates

Plot and Compare Densities

• compare_dens

Class

• coef,count_test-method
• count_test
• count_test-class
• plot,count_test,ANY-method
• plot,count_test-method
• plot.count_test
• show,count_test-method
• summary,count_test-method

Create dpcR object

• create_dpcr

Quantify droplets

• ddpcRquant

Convert data.frame to dpcr object

• df2dpcr

Class

• dpcr
• dpcr-class

Digital PCR Analysis

• dpcR
• dpcR-package

Calculate Density of Single dPCR Run

• dpcr_density

Digital PCR Density Graphical User Interface

• dpcr_density_gui

Calculate Density of Multiple dPCR runs

• dpcr_density_table

Convert dpcr object to data frame

• dpcr2df
• dpcr2df,adpcr-method
• dpcr2df,dpcr-method
• dpcr2df-methods

Digital PCR Report Graphical User Interface

• dpcReport

Methylated human gDNA

• dPCRmethyl

Extract Assays or Experiments

• extract_dpcr

Extract Digital PCR Run

• extract_run

Limit Cy0 values

• limit_cq

Artificial data set with many peaks

• many_peaks

Calculate Moments of Poisson Distribution

• moments
• moments,dpcr-method
• moments,matrix-method
• moments,numeric-method
• moments-methods

Convert numeric to integer

• num2int

Plasmid dilution series results

• pds

Plasmid dilution series raw data

• pds_raw

Plot

• plot,qdpcr,ANY-method
• plot,qdpcr-method
• plot.qdpcr

Plot Panel

• plot_panel

Amplitude Plot VIC and FAM Channels of a Droplet Digital PCR Experiment

• plot_vic_fam

Class

• qdpcr
• qdpcr-class
• show,qdpcr-method
• show.qdpcr
• summary,qdpcr-method
• summary.qdpcr

qPCR Analyser

• qpcr_analyser
• qpcr_analyser,adpcr-method
• qpcr_analyser,data.frame-method
• qpcr_analyser,modlist-method
• qpcr_analyser-methods

qPCR to Poisson Process

• qpcr2pp

Read digital PCR amplitude raw data

• read_amp

Read BioMark

• read_BioMark

Read digital PCR data

• read_dpcr

Read QX100

• read_QX100

Read QX200

• read_QX200

Read digital PCR raw data

• read_raw

Rename object

• rename_dpcr

Class

• rtadpcr
• rtadpcr-class

Methods for Function

• show
• show,dpcr-method
• show-methods

Simulate Array Digital PCR

• sim_adpcr

Simulate Droplet Digital PCR

• sim_dpcr

Simulated Digital PCR data

• six_panels

Methods for Function

• summary
• summary,adpcr-method
• summary,dpcr-method
• summary-methods
• summary.adpcr
• summary.dpcr

Test counts

• test_counts

Compare digital PCR runs - interactive presentation

• test_counts_gui

Dispersion Test for Spatial Point Pattern in Array dPCR Based on Quadrat

• test_panel

Peak Test

• test_peaks
• test_peaks,adpcr-method
• test_peaks,numeric-method
• test_peaks-methods

Compare pooled digital PCR

• test_pooled

Rate ratio test

• test_ratio
• test_ratio,adpcr
• test_ratio,adpcr,adpcr-method
• test_ratio,adpcr-method
• test_ratio,dpcr
• test_ratio,dpcr,dpcr-method
• test_ratio,dpcr-method
• test_ratio,numeric
• test_ratio,numeric,numeric-method
• test_ratio,numeric-method

Digitalized Data from a Fluidigm Array

• White