Copy number variation experiment

Copy Number Variation of MYC Gene for seven patients measured using QX200 (Biorad)

Format

An object of class adpcr with "tnp" type containing four runs from seven experiments (four runs per each experiment).

Source

Dorazio RM, Hunter ME, Statistical Models for the Analysis and Design of Digital Polymerase Chain Reaction (dPCR) Experiments. Analytical Chemistry 2015. 87(21): p.10886-10893

Examples

data(BioradCNV)
summary(BioradCNV)
#>      CN1.1          CN1.2          CN1.3          CN1.4          CN2.1     
#>  Min.   :1687   Min.   :3266   Min.   :1787   Min.   :3490   Min.   :4168  
#>  1st Qu.:1687   1st Qu.:3266   1st Qu.:1787   1st Qu.:3490   1st Qu.:4168  
#>  Median :1687   Median :3266   Median :1787   Median :3490   Median :4168  
#>  Mean   :1687   Mean   :3266   Mean   :1787   Mean   :3490   Mean   :4168  
#>  3rd Qu.:1687   3rd Qu.:3266   3rd Qu.:1787   3rd Qu.:3490   3rd Qu.:4168  
#>  Max.   :1687   Max.   :3266   Max.   :1787   Max.   :3490   Max.   :4168  
#>      CN2.2          CN2.3          CN2.4          CN3.1          CN3.2     
#>  Min.   :4093   Min.   :4332   Min.   :4400   Min.   :5939   Min.   :4313  
#>  1st Qu.:4093   1st Qu.:4332   1st Qu.:4400   1st Qu.:5939   1st Qu.:4313  
#>  Median :4093   Median :4332   Median :4400   Median :5939   Median :4313  
#>  Mean   :4093   Mean   :4332   Mean   :4400   Mean   :5939   Mean   :4313  
#>  3rd Qu.:4093   3rd Qu.:4332   3rd Qu.:4400   3rd Qu.:5939   3rd Qu.:4313  
#>  Max.   :4093   Max.   :4332   Max.   :4400   Max.   :5939   Max.   :4313  
#>      CN3.3          CN3.4          CN5.1          CN5.2          CN5.3     
#>  Min.   :5958   Min.   :4349   Min.   :7772   Min.   :3844   Min.   :7886  
#>  1st Qu.:5958   1st Qu.:4349   1st Qu.:7772   1st Qu.:3844   1st Qu.:7886  
#>  Median :5958   Median :4349   Median :7772   Median :3844   Median :7886  
#>  Mean   :5958   Mean   :4349   Mean   :7772   Mean   :3844   Mean   :7886  
#>  3rd Qu.:5958   3rd Qu.:4349   3rd Qu.:7772   3rd Qu.:3844   3rd Qu.:7886  
#>  Max.   :5958   Max.   :4349   Max.   :7772   Max.   :3844   Max.   :7886  
#>      CN5.4          CN6.1          CN6.2          CN6.3          CN6.4     
#>  Min.   :3940   Min.   :6197   Min.   :2358   Min.   :6205   Min.   :2466  
#>  1st Qu.:3940   1st Qu.:6197   1st Qu.:2358   1st Qu.:6205   1st Qu.:2466  
#>  Median :3940   Median :6197   Median :2358   Median :6205   Median :2466  
#>  Mean   :3940   Mean   :6197   Mean   :2358   Mean   :6205   Mean   :2466  
#>  3rd Qu.:3940   3rd Qu.:6197   3rd Qu.:2358   3rd Qu.:6205   3rd Qu.:2466  
#>  Max.   :3940   Max.   :6197   Max.   :2358   Max.   :6205   Max.   :2466  
#>      CN14.1         CN14.2         CN14.3          CN14.4         CN16.1     
#>  Min.   :9913   Min.   :2363   Min.   :11117   Min.   :2734   Min.   :13919  
#>  1st Qu.:9913   1st Qu.:2363   1st Qu.:11117   1st Qu.:2734   1st Qu.:13919  
#>  Median :9913   Median :2363   Median :11117   Median :2734   Median :13919  
#>  Mean   :9913   Mean   :2363   Mean   :11117   Mean   :2734   Mean   :13919  
#>  3rd Qu.:9913   3rd Qu.:2363   3rd Qu.:11117   3rd Qu.:2734   3rd Qu.:13919  
#>  Max.   :9913   Max.   :2363   Max.   :11117   Max.   :2734   Max.   :13919  
#>      CN16.2         CN16.3          CN16.4    
#>  Min.   :4330   Min.   :13752   Min.   :4394  
#>  1st Qu.:4330   1st Qu.:13752   1st Qu.:4394  
#>  Median :4330   Median :13752   Median :4394  
#>  Mean   :4330   Mean   :13752   Mean   :4394  
#>  3rd Qu.:4330   3rd Qu.:13752   3rd Qu.:4394  
#>  Max.   :4330   Max.   :13752   Max.   :4394