Extract Assays or Experiments

Extract all runs belonging to specific assay or experiment(s) from a codedpcr object while preserving all other attributes.

extract_dpcr(input, id_exper = NULL, id_assay = NULL)

Arguments

input

object of the class adpcr or dpcr.

id_exper

vector of indices or names of experiments. Must be NULL if id_assay is specified.

id_assay

vector of indices or names of assays. Must be NULL if id_exper is specified.

Value

The object of the input's class (adpcr or dpcr).

Note

The standard Extract operator x[i] treats dpcr objects as matrix and extracts values without preserving other attributies of the object.

See also

Extract run(s): extract_run.

Examples

#extract using only experiment's ID
extract_dpcr(six_panels, id_exper = 1)
#>      Experiment1.1 Experiment1.2
#> [1,]             0             0
#> [2,]             0             0
#> [3,]             0             0
#> [4,]             0             0
#> [5,]             0             0
#> 
#> 760 data points ommited.
#> Data type: 'nm'

#extract using assay name
extract_dpcr(six_panels, id_assay = "MYC")
#>      Experiment1.2 Experiment2.2 Experiment3.2
#> [1,]             0             0             0
#> [2,]             0             0             0
#> [3,]             0             0             0
#> [4,]             0             0             0
#> [5,]             0             0             0
#> 
#> 760 data points ommited.
#> Data type: 'nm'

#extract using multiple names
extract_dpcr(six_panels, id_exper = c("Experiment1", "Experiment2"))
#>      Experiment1.1 Experiment1.2 Experiment2.1 Experiment2.2
#> [1,]             0             0             0             0
#> [2,]             0             0             0             0
#> [3,]             0             0             0             0
#> [4,]             0             0             0             0
#> [5,]             0             0             0             0
#> 
#> 760 data points ommited.
#> Data type: 'nm'