Binarize digital PCR data

Transforms multinomial (number of molecules per partition) or continuous (fluorescence) digital PCR data to binary (positive/negative partition) format.

binarize(input)

Arguments

input

object of the class adpcr or dpcr with one of following types:"ct", "fluo" or "nm".

Value

object of the class adpcr or dpcr (depending on input) with type "np".

Examples

#adpcr object
rand_array <- sim_adpcr(200, 300, 100, pos_sums = FALSE, n_panels = 1)
binarize(rand_array)
#>      Experiment1.1
#> [1,]             1
#> [2,]             1
#> [3,]             0
#> [4,]             1
#> [5,]             0
#> 
#> 295 data points ommited.
#> Data type: 'np'

#dpcr object
rand_droplets <- sim_dpcr(200, 300, 100, pos_sums = FALSE, n_exp = 1)
binarize(rand_droplets)
#>      Experiment1.1
#> [1,]             0
#> [2,]             0
#> [3,]             1
#> [4,]             1
#> [5,]             1
#> 
#> 295 data points ommited.
#> Data type: 'np'